postfis {Geneclust}R Documentation

Posterior distribution of inbreeding coefficients

Description

Computes the posterior mean and some posterior quantiles for inbreeding coefficients.

Usage

postfis(path.mcmc, postmode.indiv, probs = c(0.025, 0.25, 0.5, 0.75, 0.975), plot = TRUE, print = FALSE, file=path.mcmc)

Arguments

path.mcmc Path to MCMC program output files
postmode.indiv A vector which contains the population of origin of each individual
probs Numeric vector of probabilities with values in [0,1]. By default,probs=c(0.025,0.25,0.50,0.75,0.975) in order to compute credibility intervals.
plot Logical: if TRUE histograms are plotted
print Logical: if TRUE histograms are also printed
file Character: Path to file where figures should be printed

Value

postmean.fis A numerical vector which contains the posterior mean of inbreeding coefficient in each identified cluster
quant.fis A matrix that stores the posterior distribution quantiles of each inbreeding coefficient. Each line corresponds to one cluster

Author(s)

Sophie Ancelet

Examples


# library(Geneclust)

## see the example described in the function mcmcgeneclust

[Package Geneclust version 1.0.0 Index]