mySampleData {DRI}R Documentation

DR-Integrator Sample Data

Description

Sample data of 100 genes copy number and gene expression data from 50 cell lines

Usage

data(mySampleData)

Format

The format is: List of 6 $ GeneIDs : Factor w/ 100 levels "_ACTRT2","_AGRN",..: 54 55 50 58 100 44 62 51 52 56 ... $ GeneNames: Factor w/ 100 levels "_ACTRT2","_AGRN",..: 54 55 50 58 100 44 62 51 52 56 ... $ Chr : int [1:100] 1 1 1 1 1 1 1 1 1 1 ... $ Nuc : int [1:100] 20463 79326 127660 225560 248946 307582 307582 316075 316090 342167 ... $ DNA.data : num [1:100, 1:50] 0 0 0 0 0 0 0 0 0 0 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:100] "1" "2" "3" "4" ... .. ..$ : chr [1:50] "X184A1" "BT20" "BT474" "BT483" ... $ RNA.data : num [1:100, 1:50] NA -0.791 -1.968 NA 0.319 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:100] "1" "2" "3" "4" ... .. ..$ : chr [1:50] "X184A1.1" "BT20.1" "BT474.1" "BT483.1" ...

Source

Kao, J., Salari, K., Bocanegra, M.C. et al. (2009) Molecular profiling of breast cancer cell lines defines relevant tumor models and provides a resource for cancer gene discovery. PLoS One.

References

Salari, K., Tibshirani, R., and Pollack, J.R. (2009) DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data. http://pollacklab.stanford.edu/

Examples

data(mySampleData)

[Package DRI version 1.0 Index]