# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

PortSystem          1.0

name                fastlink
version             4.1P-20140912
revision            0
checksums           rmd160  bf29d420b5a5255b56eddd103baa210cd2e0c6f3 \
                    sha256  36a3e4aad31f24830f91ac249682e7be5837cbe09044a414dc82abcd2fd3e6b3 \
                    size    1331631

categories          science
platforms           darwin
license             none
maintainers         nomaintainer

description         Genetic Analysis Software

long_description    Genetic linkage analysis is a statistical technique \
                    used to map genes and find the approximate location \
                    of disease genes.

homepage            https://www.ncbi.nlm.nih.gov/CBBresearch/Schaffer/fastlink.html
master_sites        http://ftp.ncbi.nih.gov/pub/fastlink/ \
                    ftp://ftp.ncbi.nih.gov/pub/fastlink/
distfiles           fastlink.tar.Z
dist_subdir         ${name}/${version}

worksrcdir          ${name}

patch.dir           ${worksrcpath}/[lindex [split ${version} -] 0]/src
patchfiles          malloc.patch

use_configure       no

variant universal {}

build.dir           ${patch.dir}
build.target        installfast

build.args          CC=${configure.cc} \
                    EXTRAFLAGS="${configure.cppflags} ${configure.ldflags} [get_canonical_archflags]"

destroot         {
    xinstall -W ${build.dir} lodscore ilink linkmap mlink unknown ${destroot}${prefix}/bin
    xinstall -d ${destroot}${prefix}/share/doc/fastlink
    xinstall -m 0444 {*}[glob -directory ${worksrcpath} README.* *.ps] ${destroot}${prefix}/share/doc/fastlink
}