# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 PortSystem 1.0 PortGroup python 1.0 PortGroup wxWidgets 1.0 name py-pyphant version 1.0b3 revision 1 categories-append science description python framework for analysing and managing scientific data maintainers fmf.uni-freiburg.de:servicegruppe.wissinfo \ {rowue @rowue} openmaintainer long_description The python framework pyphant allows for the creation \ and application of data flow models. The central idea \ of this approach is to encapsulate each data processing \ step in one unit which is called a worker. \ A worker receives input via sockets and provides the \ results of its data processing via plugs. These can be \ inserted into other workers' sockets. The resulting \ directed graph is called a recipe. Classes for these \ objects comprise the Pyphant core. \ To implement actual processing steps, Pyphant relies on \ third party plug-ins, also referred to as toolboxes, \ which extend the basic worker class, e.g. \ py-pyphant-imageprocessing. \ On top of the core, Pyphant offers a data exchange layer \ on basis of numpy arrays which facilitates the \ interoperability of the workers and fully supports \ physical quantities with errors and units. \ The third layer is a graphical user interface \ allowing for the interactive construction of recipes \ as well as the calculation and visualization of data \ from any worker in the recipe. homepage http://www.fmf.uni-freiburg.de/service/servicegruppen/sg_wissinfo/projekte/Pyphant license BSD platforms {darwin any} supported_archs noarch distname pyphant master_sites sourceforge:pyphant python.versions 27 if {${name} ne ${subport}} { depends_build-append port:py${python.version}-setuptools if {[string match {py??-pyphant-*} ${subport}]} { depends_lib-append port:py${python.version}-pyphant } } foreach python.vers ${python.versions} { subport py${python.vers}-${distname} { PortGroup app 1.0 set python.version ${python.vers} worksrcdir ${distname}-${version} distfiles ${distname}-${version}${extract.suffix} checksums rmd160 aa56f61a73300651730f867b249264e2ca63d200 \ sha256 c873352467f9ecf96fac03082e3cbc4153d13f8103e5339e608897884867db53 app.name pyphant-${python.branch} app.executable pyphant-${python.branch} app.icon ${filespath}/Pyphant.icns wxWidgets.use wxPython-3.0 depends_lib-append port:py${python.version}-numpy \ port:py${python.version}-scipy \ port:py${python.version}-tables \ port:py${python.version}-matplotlib \ port:py${python.version}-simplejson \ port:py${python.version}-paste \ port:py${python.version}-mx-base \ port:py${python.version}-sogl \ port:py${python.version}-wxpython-3.0 depends_run-append port:py${python.version}-configobj \ port:py${python.version}-tornado pre-destroot { file copy ${filespath}/pyphant.quartz ${destroot}${prefix}/bin file rename ${destroot}${prefix}/bin/pyphant.quartz ${destroot}${prefix}/bin/pyphant-${python.branch} reinplace "s|@PREFIX@|${prefix}|" ${destroot}${prefix}/bin/pyphant-${python.branch} reinplace "s|@PYTHONBRANCH@|${python.branch}|" ${destroot}${prefix}/bin/pyphant-${python.branch} } } subport py${python.vers}-${distname}-fmf { set python.version ${python.vers} description Full-Metadata Format toolbox for py${python.version}-pyphant long_description This toolbox enables the py${python.version}-pyphant framework to read \ files written in the Full-Metadata Format (FMF). \ See http://arxiv.org/abs/0904.1299 for an introduction \ to the FMF. There is also support for writing files \ in the FMF, although this feature is currently not \ accessible from the pyphant GUI. distname ${distname}.fmf-${version} checksums rmd160 42d70609400f636b2c4ffced5e5f2192f76ac4ad \ sha256 8ef7acf200f6a7a8805d4f91680fd771129f1c68178d8d710b7a9a322267cdfc } subport py${python.vers}-${distname}-imageprocessing { set python.version ${python.vers} description imageprocessing toolbox for py${python.version}-pyphant long_description This toolbox provides a set of imageprocessing workers, \ i.e. encapsulated data processing steps for the \ py${python.version}-pyphant framework. Currently there are 22 workers \ providing operations varying from simple functions like \ 'inversion' or some scipy.ndimage filters to more complex \ operations, e.g. auto-focus evaluation of transmitted \ light microscopy photographs. distname ${distname}.imageprocessing-${version} checksums rmd160 e4d160989c0e5b07528577052dd451b47828a7d4 \ sha256 9e1619cf3abbe94ce785b9b5b02383b5a31f9ba2ef0bc75922c785195620229f revision 2 # numpy and scipy are already dependencies of pyphant depends_lib-append port:py${python.version}-Pillow \ port:py${python.version}-numpy \ port:py${python.version}-scipy patchfiles Pillow_patch-setup.py.diff \ Pillow_patch-pyphant.imageprocessing.egg-info-requires.txt.diff variant pil description {Use PIL instead of Pillow as the imaging library} { depends_lib-replace port:py${python.version}-Pillow port:py${python.version}-pil patchfiles-delete Pillow_patch-setup.py.diff patchfiles-delete Pillow_patch-pyphant.imageprocessing.egg-info-requires.txt.diff } if {![catch {set pil_installed [lindex [registry_active py${python.version}-pil] 0]}]} { default_variants +pil } } subport py${python.vers}-${distname}-osc { set python.version ${python.vers} description organic solar cells toolbox for py${python.version}-pyphant long_description This Toolbox offers various workers for the \ analysis of organic solar cells. It is joined \ work with Kristian O. Sylvester-Hvid from the \ Risø National Laboratory for Sustainable Energy. \ The main purpose at the moment is the generation \ of height maps for polymer based solar cells. \ The developed workers are however applicable in \ a wide range of problems. distname ${distname}.osc-${version} checksums rmd160 1093b2a9b036648f76089f5d1b919186b7a2dd2c \ sha256 ba573aaa5cb78c4f692798e2c6845f4a0b11b99d721905be56c47db1885d3e67 depends_lib-append port:py${python.version}-numpy \ port:py${python.version}-scipy \ port:py${python.version}-matplotlib } subport py${python.vers}-${distname}-statistics { set python.version ${python.vers} description statistics toolbox for py${python.version}-pyphant long_description This toolbox provides the histogram worker which enables \ the py${python.version}-pyphant framework to obtain histograms from \ array-like data. distname ${distname}.statistics-${version} checksums rmd160 893f87f8d9b206a71a963ba30be37e2fd4bb002f \ sha256 ae71e825508fe74c88693108a7bc0612416fdabb1e71442c815ccbfe2b37c7cb depends_lib-append port:py${python.version}-numpy \ port:py${python.version}-scipy } subport py${python.vers}-${distname}-tools { set python.version ${python.vers} description tools toolbox for py${python.version}-pyphant long_description This toolbox currently provides two workers for the \ py${python.version}-pyphant framework. These workers can be integrated \ in a data flow model and simply serve as data sources for \ data that is managed by a py${python.version}-pyphant core module called \ KnowledgeManager (KM). The KM accumulates metadata in a \ sqlite3 database and the above mentioned workers present \ parameters to perform a metadata search and finally \ load and provide the data that matched the search. distname ${distname}.tools-${version} checksums rmd160 7eabbd970968bd118a9fd93670bf79e48790d130 \ sha256 1d97e9b5b798047aa529148e8c5356cdbc61a3333394b5e72e8cf6b429c3b23f } }