Package: SparseArray
Title: Efficient in-memory representation of multidimensional sparse
        arrays
Description: The SparseArray package defines the SparseArray virtual class
	to be extended by other S4 classes that wish to represent in-memory
	multidimensional sparse arrays. One such extension is the
	SVT_SparseArray class, also defined in the package, that provides
	an efficient representation of the nonzero multidimensional data
	via a novel layout called the "SVT layout". SVT_SparseArray objects
	mimic the behavior of ordinary matrices or arrays in R as much as
	possible. In particular, they suppport most of the "standard array
	API" defined in base R.
biocViews: Infrastructure, DataRepresentation
URL: https://bioconductor.org/packages/SparseArray
BugReports: https://github.com/Bioconductor/SparseArray/issues
Version: 1.0.0
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("Vince", "Carey", role="fnd",
		email="stvjc@channing.harvard.edu"),
	person("Rafael A.", "Irizarry", role="fnd",
		email="rafa@ds.harvard.edu"))
Depends: R (>= 4.3.0), methods, Matrix, BiocGenerics (>= 0.43.1),
        MatrixGenerics (>= 1.11.1), S4Vectors, S4Arrays (>= 0.99.0)
Imports: stats, matrixStats, IRanges, XVector
LinkingTo: S4Vectors, IRanges, XVector
Suggests: DelayedArray, testthat, knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
Collate: sparseMatrix-utils.R SparseArray-class.R
        COO_SparseArray-class.R SVT_SparseArray-class.R
        extract_sparse_array.R read_block_as_sparse.R
        SparseArray-subsetting.R SparseArray-subassignment.R
        SparseArray-combine.R SparseArray-summarization.R
        SparseArray-Ops-methods.R SparseArray-Math-methods.R
        SparseArray-Complex-methods.R SparseArray-misc-methods.R
        SparseMatrix-mult.R matrixStats-methods.R rowsum-methods.R
        randomSparseArray.R readSparseCSV.R zzz.R
git_url: https://git.bioconductor.org/packages/SparseArray
git_branch: RELEASE_3_17
git_last_commit: 5fd84af
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-25
NeedsCompilation: yes
Packaged: 2023-04-25 22:53:09 UTC; biocbuild
Author: Hervé Pagès [aut, cre],
  Vince Carey [fnd],
  Rafael A. Irizarry [fnd]
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>
