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| BisseToHisse | BisseToHisse |
| hisse | Hidden State Speciation and Extinction |
| MarginRecon | Ancestral State Estimation based on Marginal Reconstruction |
| ParDrop | Transition Rate matrix generator |
| ParEqual | Transition Rate matrix generator |
| SupportRegion | Adaptive Sampling of the Likelihood Surface |
| TransMatMaker | Transition Rate matrix generator |