Run a Regenerative Markov chain in Parallel on a Cluster

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Documentation for package ‘McParre’ version 1.0.1

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McParre-package Parallel Regenerative Markov Chains
coeffVar Compute Coefficient of Variation of Generated Tours
computeCI Compute Confidence Intervals on Parameters of Interest
genNextStateHLMM One-step generation function for Hierarchical Linear Mixed Model.
genNextStateOnewayDiffuse One-step generation function for Oneway Model with Diffuse Priors
genNextStateOnewayPlain One-step generation function for Oneway Hierarchical Linear Model.
genNextStateTopicModel One-step generation function for Topic Models Gibbs Sampler
McParre Parallel Regenerative Markov Chains
regenProbsFromRawOutput Compute Regeneration Probabilities for a Markov Chain Run
regenProbsOnewayDiffuse Compute Regeneration Probability Given Current and Future States
regenProbsOnewayPlain Compute Regeneration Probability Given Current and Future States
regenProbsTopicModel Compute Regeneration Probability Given Current and Future States in Topic Model
runMarkovChainNoRegenS Run a Markov chain Without Regeneration on Single Processor
runMarkovChainRegenIP Interactively Run a Markov chain with Regeneration on Parallel Processors
runMarkovChainRegenP Run a Markov chain with Regeneration on Multiple Processors in Parallel
runMarkovChainRegenS Run a Markov chain with Regeneration on Single Processor
smallFnHLMM Compute Small Function in Minorization of Hierarchical Linear Mixed Model.
smallFnOnewayPlain Compute Small Function in Minorization of Oneway Hierarchical Linear Model.
smallMeasureHLMM Compute Small Measure in Minorization of Hierarchical Linear Mixed Model.
smallMeasureOnewayPlain Compute Small Measure in Minorization of Oneway Hierarchical Linear Model.
srq Plot Scaled Regeneration Quantile Plot of Generated Tours
transDensHLMM Compute Markov transition density for Hierarchical Linear Mixed Model.
transDensOnewayPlain Compute Markov transition density for Oneway Hierarchical Linear Model.